PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023919-PA
Common NameOsI_26817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YA
Protein Properties Length: 297aa    MW: 32627.7 Da    PI: 8.2716
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023919-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32143199158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  BGIOSGA023919-PA 143 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 199
                       69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-37141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.238142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27144199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.7E-24145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.7E-24176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDHRSHTTP NYDFFSGDYQ MKQLGHKMYD QDSPSSDSGQ SHQEESAMND SSPNERHTST  60
QSDNNDGHQM PDQDKTKSVS SLGNPGALPP KLDYSQSFAC IPYTADAYYG GVLTGYSSHA  120
IVHPQQNGTA NSRVPLPVEP AAEEPIFVNA KQYHAILRRR QIRAKLEAQN KLVKGRKPYL  180
HESRHRHAMK RARGSGGRFL NTKQLEEQKQ QQEEEAASGG ASSGNRTCLQ NGTGSAPSAS  240
SPSEIASVST SREFLGNHEQ SHFPSAGFLP TMSFRAQNGG DGKLVANAIH QRVSMMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-23143204263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183192RHRHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.137360.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329868930.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880330.0AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK1016840.0AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646559.10.0PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_015646560.10.0PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_015646561.10.0PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_015646562.10.0PREDICTED: nuclear transcription factor Y subunit A-4
SwissprotQ9LNP63e-42NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLB8B8C30.0B8B8C3_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA023919-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-33nuclear factor Y, subunit A5